Timetable
Co-located Event
Tutorial
Workshop
Main
Conference
Co-located Event
Tutorial
Workshop
Main
Conference
Co-located Event
Tutorial
Workshop
Main
Conference
Posters
Session Chairs: Tanu Malik (DePaul U); Dan Katz (UIUC)
-
A Methodology to Generate Efficient Neural Networks for Classification of Scientific
Datasets
Patel, Keller Rorabaugh, Olaya, Caino-Lores, Channing, Schuman, Miyashita, Tama, Taufer - Generating Synthetic Images & Data to Improve Object Detection in CCTV Footage from
Public Transport
Simpson, Nik Aznan, Brennan, Watson, James, Jonczyk - Context-Aware Notebook Search in a Jupyter-Based Virtual Research
Environment
Li, Farshidi, Bianchi, Koulouzis, Zhao - Upscaling of Cosmological N-body Simulations
Conceição, Krone-Martins, da Silva - Examining the Effect of Implementation Factors on Deep Learning
Reproducibility
Coakley, Kirkpatrick, Gundersen - Toward Scientific Workflows in a Serverless World
Khochare, Simmhan, Mehta, Agarwal - AIQUAM, Artificial Intelligence-based water QUAlity Model: assessing and predicting
farmed mussels quality in the Bay of Naples (Italy)
De Vita, Mellone, Di Luccio, Kosta, Ciaramella, Montella - Augmenting Singularity to Generate Fine-grained Workflows, Record Trails, and Data
Provenance
Kennedy, Olaya, Lofstead, Vargas, Taufer - The Materials Commons Data Repository
Tarcea, Puchala, Scorzelli, Pascucci, Taufer, Allison - Neural Network Bias in Analysis of Galaxy Photometry Data
Goddard, Shamir - Using Geoweaver to Make Snow Mapping Workflow FAIR
Alnaim (Alnuaim), Sun - Robust Meta-Workflow Management with Mufasa
Lyons, Thain - Robustness of Sample and Multiscale Entropy Estimators in Noisy and Incomplete Time
Series
Perkey, Krone-Martins - Application of Edge-to-Cloud Methods Toward Deep Learning
Choudhary, Nersisyan, Lin, Chandrasekaran, Mayani, Pottier, Murillo, Virdone, Kee, Deelman - Representing Fourier Bases for cryo-EM in ASPIRE
Langfield, Carmichael, Wright, Andén, Singer - Enabling LivePublication
Ellerm, Adams, Gahegan, Trombach - Ubique: A New Model for Untangling Inter-task Data Dependence in Complex HPC
Workflows
Yeom, Ahn, Lumsden, Luettgau, Caino-Lores, Taufer - Cluster Analysis of Open Research Data and a Case for Replication
Metadata
Trisovic - Anguix: Cell Signalling Modelling Improvement through Sabio-RK association to
Reactome
Montoni, N. de Sousa, B. de Lima Junior, G.S. Campos, Wang, M. Constantino, S. Sanctos, A. Armelin, S. Reis - An open science exploration of global 1-km simulations of the earth’s
atmosphere
Anantharaj, Hatfield, Polichtchouk, Wedi, Dueben, Papatheodore - A Science-Enabled Virtual Reality Demonstration to Increase Social Acceptance of
Prescribed Burns
Nealey, Encinas Pacheco, Gomez Moreno, Floca, Crawl, Altintas - PiMS: A Pre-ML Labelling Tool
Logothetis, Barnett, Hoon, Thudumu, Mathew, Luckhoff, O’Reilly, Vasa, Mouzakis, Fitzgerald - Exploring Tradeoffs in Federated Learning on Serverless Computing
Architectures
Baughman, Foster, Chard - A Framework for Evaluating MRC Approaches with Unanswerable Questions
Du, Thudumu, Singh, Barnett, Logothetis, Vasa, Mouzakis
Co-located Event
Tutorial
Workshop
Main
Conference
Session 1: Best Paper (BP) and Best Student Paper (BSP) Candidates
Session Chair: David Abramson (U. of Queensland)
- Reproducible Notebook Containers using Application Virtualization
(BP/BSP)
Ahmad, Manne, Malik - FLoX: Federated Learning with FaaS at the Edge (BP/BSP)
Kotsehub, Baughman, Chard, Patros, Rana, Foster, Chard - Identifying Structural Properties of Proteins from X-ray Free Electron Laser Diffraction
Patterns (BP/BSP)
Olaya, Caino-Lores, Lama, Patel, Rorabaugh, Miyashita, Tama, Taufer - Scalable Composition and Analysis Techniques for Massive Scientific Workflows
(BP)
Ahn, Zhang, Mast, Herbein, Di Natale, Kirshner, Ade Jacobs, Karlin, Milroy, De Supinski, Van Essen, Allen, Lightstone
Short Talks
Session Chair: Kyle Chard (U. Chicago)
- Advancing Airborne Hyperspectral Data Processing for Sustainable Agriculture Using
Parsl
Friedel, Guan, Zhou, Zhang, Wang, Katz - Crystal Structure Generation Using Wasserstein Generative Adversarial
Network
Gholami Shiri, Sparks - Question answering systems for healthcare
Kell, Marshall - High-Throughput In-Situ Workflows for Ensemble Molecular Dynamics
Caino-Lores, Cuendet, Estrada, Deelman, Weinstein, Taufer - Toward a Lightweight Indexing Service for the National Science Data
Fabric
Luettgau, Scorzelli, Zhou, Tarcea, Lofstead, Pascucci, Taufer - A software framework for scientific workflow orchestration at large scale
Zhou, Luettgau, Kancharla, Kane, Croom, Wheeler, Newell, Scorzelli, Pascucci, Taufer - Toward Reusable Science with Readable Code and Reproducibility
Bahaidarah, Hung, Francisco De Melo Oliveira, Penumaka, Rosario, Trisovic - Unlocking Analysis Ready Cloud Optimized (ARCO) file format in the OpenVisus
framework
Koppe, Scorzelli, Pascucci
Session 2: Data and Healthcare
Session Chair: Roselyne Barreto Tchoua (DePaul University)
- Using Microservices to Design Patient-facing Research Software
Chapman, G-Medhin, Sassoon, Kokciyan, Sklar, Curcin - The e-Science Central Study Data Platform
Watson, Hiden - Infection Transmission Ontology: Standardization of Infection Transmission
Data
Slavco, de Vos, Hostens, Top, Fischer - Multi-Tissue Analysis Using Synchrotron Radiation Micro-CT
Images
Sieverts, Parkinson, Sborov, Pomicter, Williams, Acevedo
Session 3: Image Analytics
Session Chair: Tamás Budavári (Johns Hopkins University)
- Remote Instrumentation Science Environment for Intelligent Image
Analytics
Lemus Alarcon, Wang, Nguyen, Pandey, Bunyak, Maschmann, Palaniappan, Calyam - Efficient Radio Interferometric Imaging on the GPU
Liu, Luo, Wang - NeuroCI: Continuous Integration of Neuroimaging Results Across Software Pipelines and
Datasets
Sanz-Robinson, Jahanpour, Phillips, Glatard, Poline - CloudNet: A Deep Learning Approach for Mitigating Occlusions in Landsat-8 Imagery using
Data Coalescence
Khandelwal, Armstrong, Matin, Pallickara, Pallickara
Session 4: Environmental Challenges
Session Chair: José Moreira (Universidade de Aveiro)
- Efficient Cloud-Based Calibration of Input Data for Forest Fire Spread
Prediction
Fraga, Cortés, Margalef, Hernández - Towards Optimal Line of Sight Coverage
Gu, Budavari, Galante, Burns - UAV Swarms in Smart Agriculture: Experiences and Opportunities
Qu, Boubin, Gafurov, Zhou, Aloysius, Nguyen, Calyam - Automating Multivariable Workflow Composition for Model-to-Model
Integration
Vargas Acosta, Garnica Chavira, Villanueva-Rosales, Pennington - Finding the Signal: Near Real-time Data Analysis for Urban Traffic Monitoring on a
Distributed Bluetooth Sensor Network
Sichani, Richard, Bubendorfer
Session 5: FAIR Data
Session Chair: Juliane Schneider (GO FAIR US)
- SIM-SITU : A Framework for the Faithful Simulation of in situ
Processing
Honoré, Do, Pottier, Ferreira da Silva, Deelman, Suter - Democratising large scale instrument-based science through
e-Infrastructure
Abramson, Barkauskas, Carroll, Condon, Modhiran, Nguyen, Springfield, Watterson - Automatic Versioning of Time Series Datasets: a FAIR Algorithmic
Approach
González-Cebrián, McGuinness, Bradford, Chis, González-Vélez - Managing Database-Application Co-Evolution in a Scientific Data
Ecosystem
Schuler, Kesselman
Session 6: Knowledge in the Data
Session Chair: Marcelo da Silva Reis (University of Campinas)
- Text Summarization towards Scientific Information Extraction
Keller, Furst, Raicu, Hastings, Tchoua - A Framework for Extracting Scientific Measurements and Geo-Spatial Information from
Scientific Literature
Suryani, Wölker, Sharma, Beth, Wallman, Renz - frances: A Deep Learning NLP and Text Mining Web Tool to Unlock Historical Digital
Collections
Filgueira - Enabling Call Path Querying in Hatchet to Identify Performance Bottlenecks in Scientific
Applications
Lumsden, Luettgau, Lama, Scully-Allison, Brink, Isaacs, Pearce, Taufer
Co-located Event
Tutorial
Workshop
Main
Conference
Session 7: HPC and eScience
Session Chair: Silvina Caino-Lores (University of Tennessee Knoxville)
- Enabling Autonomous Electron Microscopy for Networked Computation and
Steering
Al-Najjar, Rao, Sankaran, Ziatdinov, Mukherjee, Ovchinnikova, Roccapriore, Lupini, Kalinin - HPC Extensions to the OpenKIM Processing Pipeline
Karls, Clark, Waters, Elliott, Tadmor - Running Ensemble Workflows at Extreme Scale: Lessons Learned and Path
Forward
Mehta, Cliff, Suter, Walker, Wolf, Jacobson, Klasky - Understanding the Impact of Synchronous, Asynchronous, and Hybrid In-Situ Techniques in
Computational Fluid Dynamics Applications
Ju, Perez, Markidis, Schlatter, Laure
Session 8: Signals and Sensor
Session Chair: Paul Watson (Newcastle University)
- A Web-Based System for Contagion Simulations on Networked
Populations
sFerdousi, Kishore, Machi, Machi, Kuhlman, Ravi - Subspace based Anomaly Detection Framework for Point Clouds
Zyl, Du, Thudumu, Logothetis, Barnett, Vasa, Mouzakis - Data Fusion for Connectivity Analysis between Ocean Regions
Trahms, Wölker, Handmann, Visbeck, Renz - Towards a Dynamic Composability Approach for using Heterogeneous Systems in Remote
Sensing
Altintas, Perez, Mishin, Trouillaud, Irving, Graham, Tatineni
Session 9: Study of Molecular Systems
Session Chair: Pania Newell (U. Utah)
- Molecular Dynamics Workflow Decomposition for Hybrid Classic/Quantum
Systems
Cranganore, De Maio, Do, Brandic, Deelman - The BioExcel methodology for developing dynamic, scalable, reliable and portable
computational biomolecular workflows
Ejarque, Andrio, Hospital, Conejero, Lezzi, Gelpi, Badia - Extending OpenKIM with an Uncertainty Quantification Toolkit for Molecular
Modeling
Kurniawan, Petrie, Transtrum, Tadmor, Elliott, Karls, Wen - ParticleGrid: Enabling Deep Learning using 3D Representation of
Materials
Zaman, Ferguson, Pereira, Akhiyarov, Araya-Polo, Chiu